PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC39740_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 105aa    MW: 11852.2 Da    PI: 8.7721
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC39740_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP27.88e-097814097
          TCP 40 GfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssasnsssg.......kaaksaaks 97
                 G+ +d +ti+ Ll q++pa ++ t t                + ++++e+       s+s+ + +       +++ks+ak+
  RrC39740_p1  7 GHTSDTETIQCLLHQSEPAAIATTTTrtlllsfacthphqhhQMPPKNET------HSSSERNYTrerprgeRKRKSTAKE 81
                 9*************************988888885443333322222222......2222122221122222222222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSFSSHGHTS DTETIQCLLH QSEPAAIATT TTRTLLLSFA CTHPHQHHQM PPKNETHSSS  60
ERNYTRERPR GERKRKSTAK ENVQGNALFG IAEKVKAMHL IGEYE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RPRGERKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-