PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3978_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 416aa MW: 47419.4 Da PI: 6.2777

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3978_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.5	2.1e-39	6	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlsk..k 96 +G+rF+Pt ee++++yLk+k+ +k+ ++e+i+e++iy ++P+ Lp +k+++++ wyfF++r+ +++ +k ++r+t sg+Wkatgkd+ +++k + RrC3978_p2 6 VGYRFSPTGEEVINYYLKNKILDKTWLVDEAIREINIYAYNPEFLPslSKIESNDLVWYFFCRRECQATDkKKGTKRTTPSGFWKATGKDRIIKEKrgH 104 7**********************999999***********5448888888****9888752667888*************99777 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g ++g+kktLv+++g+a +g+kt Wv+hey++ RrC3978_p2 105 GVEIGIKKTLVYHHGKAANGVKTPWVIHEYHI 136 788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.255	4	154	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-43	5	154	IPR003441	NAC domain
Pfam	PF02365	1.8E-23	6	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MERNLVGYRF SPTGEEVINY YLKNKILDKT WLVDEAIREI NIYAYNPEFL PSLSKIESND 60 LVWYFFCRRE CQATDKKKGT KRTTPSGFWK ATGKDRIIKE KRGHGVEIGI KKTLVYHHGK 120 AANGVKTPWV IHEYHITSLP LNQRKYVICQ VKYKGEDSLY GNNSNELSHS TMVSDLNTAR 180 VINTTPVVEQ QRDEDLCMSV DDLANPLNEQ DDPSLFDPDM FFNDNDCSYQ QPLAPYDDDD 240 NISELLKYNG GNHADVLGDL DIILQEHRND HRPKRALTGI IVDCSSGSDD AESICATSYQ 300 GTSSPDSVHS LSAQFHTSVD EIPSLRKDSS TDIQPHAETS INRMTWKSRR TVPSKLEVKE 360 GKSKAIDASM DNKKGWFITE EAMQRNHKIP PYHCLMNMIV GFILLVAFMA TLCRFY

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MERNLVGYRF SPTGEEVINY YLKNKILDKT WLVDEAIREI NIYAYNPEFL PSLSKIESND  60
LVWYFFCRRE CQATDKKKGT KRTTPSGFWK ATGKDRIIKE KRGHGVEIGI KKTLVYHHGK  120
AANGVKTPWV IHEYHITSLP LNQRKYVICQ VKYKGEDSLY GNNSNELSHS TMVSDLNTAR  180
VINTTPVVEQ QRDEDLCMSV DDLANPLNEQ DDPSLFDPDM FFNDNDCSYQ QPLAPYDDDD  240
NISELLKYNG GNHADVLGDL DIILQEHRND HRPKRALTGI IVDCSSGSDD AESICATSYQ  300
GTSSPDSVHS LSAQFHTSVD EIPSLRKDSS TDIQPHAETS INRMTWKSRR TVPSKLEVKE  360
GKSKAIDASM DNKKGWFITE EAMQRNHKIP PYHCLMNMIV GFILLVAFMA TLCRFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-20	7	136	23	145	NAC domain-containing protein 19
3swm_B	7e-20	7	136	23	145	NAC domain-containing protein 19
3swm_C	7e-20	7	136	23	145	NAC domain-containing protein 19
3swm_D	7e-20	7	136	23	145	NAC domain-containing protein 19
3swp_A	7e-20	7	136	23	145	NAC domain-containing protein 19
3swp_B	7e-20	7	136	23	145	NAC domain-containing protein 19
3swp_C	7e-20	7	136	23	145	NAC domain-containing protein 19
3swp_D	7e-20	7	136	23	145	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ420439	0.0	KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452999.1	0.0	PREDICTED: NAC domain-containing protein 69-like
Swissprot	Q9M126	1e-136	NAC69_ARATH; NAC domain-containing protein 69
TrEMBL	M4F5H1	0.0	M4F5H1_BRARP; Uncharacterized protein
STRING	Bra036327.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	1e-139	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]