PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC40065_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 110aa    MW: 12723.3 Da    PI: 4.9576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC40065_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.5e-162454487
                 -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                 r+W+++++y+++s+++vlt+GW +Fvk++ L+e+D++vF+  ++
  RrC40065_p1  2 RQWKFRYCYWRSSQSFVLTRGWIGFVKEKSLQEKDVIVFYTCKT 45
                 89**************************************5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.406163IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-13244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-16268IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-14247IPR003340B3 DNA binding domain
CDDcd100174.54E-12241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MRQWKFRYCY WRSSQSFVLT RGWIGFVKEK SLQEKDVIVF YTCKTLEGGQ SKNFLMIDVH  60
CSSDDGSAVS DEEVNETVRN SSEEEVKTEG EETKSVENKG GFMLFGVRIQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798286e-39AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence.
GenBankAY5608836e-39AY560883.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g51120) mRNA, complete cds.
GenBankCP0026846e-39CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487669.13e-71PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_018487676.13e-71PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P57e-46RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A078HID14e-54A0A078HID1_BRANA; BnaC06g03900D protein
TrEMBLA0A0D3CPU14e-54A0A0D3CPU1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GPU44e-54A0A3P6GPU4_BRAOL; Uncharacterized protein
STRINGBo6g022450.16e-55(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-41RAV family protein