PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4016_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 275aa MW: 31626.3 Da PI: 8.2042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4016_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.4	3.6e-46	8	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 pGfrFhPt+eel+++yLk+ v g+ ++ evi ++iy+++PwdLp+ + +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s ++ RrC4016_p3 8 PGFRFHPTEEELLNYYLKNMVYGNISKV-EVIGFLNIYRHDPWDLPHLSTIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLsePKRM 105 9*********************9999.99***********7777799*********************************997556777 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+grap g ktdWvm+e+r+ RrC4016_p3 106 IGLKKTLVFYRGRAPGGCKTDWVMNEFRM 134 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.887	6	152	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-54	7	152	IPR003441	NAC domain
Pfam	PF02365	7.8E-25	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSKEIELPGF RFHPTEEELL NYYLKNMVYG NISKVEVIGF LNIYRHDPWD LPHLSTIGER 60 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRMIGLKK TLVFYRGRAP 120 GGCKTDWVMN EFRMPDNCTL PKDVVLCKVY RKATSLKVLE QRAEMGAKMN HACPSSPLSS 180 SDTISFVGKE EDMMMTSFPF PQEANNNFML QGHTEEKQRE TEMKEPSSSL KLPCGVSPLP 240 ELQVPQQGFE WGQDQLLSIS PWLQNLTPIV NLINF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-44	8	157	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-44	8	157	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-44	8	157	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-44	8	157	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-44	8	155	22	171	NAC domain-containing protein 19
3swm_B	1e-44	8	155	22	171	NAC domain-containing protein 19
3swm_C	1e-44	8	155	22	171	NAC domain-containing protein 19
3swm_D	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_A	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_B	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_C	1e-44	8	155	22	171	NAC domain-containing protein 19
3swp_D	1e-44	8	155	22	171	NAC domain-containing protein 19
4dul_A	1e-44	8	157	19	170	NAC domain-containing protein 19
4dul_B	1e-44	8	157	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353307	0.0	AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486821.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q10S65	1e-84	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A398A4C4	0.0	A0A398A4C4_BRACM; Uncharacterized protein
TrEMBL	M4D974	0.0	M4D974_BRARP; Uncharacterized protein
STRING	Bra013034.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-157	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]