PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4025_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 244aa    MW: 27764.3 Da    PI: 5.9176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4025_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.4e-1024118499
                 E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS....-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesg....rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  l+p  + ks ++ ++p + a+++      +  +++ d+s     +sW++ l+  + ++  +++++ W eFv++n L + D++vF+++g++ f   v++
  RrC4025_p3  24 SLSPGQNWKSkSMRIIPQEIARSNHAA--FEHRVVF-DPSRilskNSWQLWLQ--RDKNClFMIKEDWDEFVDDNLLGSDDTLVFTHQGTMYF--QVRI 115
                 555555555524458899999888433..2223444.44444666*******4..444334*************************9998888..8998 PP

                 E-S CS
          B3  97 frk 99 
                 f+k
  RrC4025_p3 116 FKK 118
                 876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-1315120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1218119IPR015300DNA-binding pseudobarrel domain
CDDcd100174.72E-1021117No hitNo description
SMARTSM010193.9E-1121119IPR003340B3 DNA binding domain
PROSITE profilePS5086310.41922119IPR003340B3 DNA binding domain
PfamPF023621.2E-733118IPR003340B3 DNA binding domain
SMARTSM010190.048147240IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-5162228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.100.001204237IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.613206244IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKRKVSPESE IHENQATKTT FSKSLSPGQN WKSKSMRIIP QEIARSNHAA FEHRVVFDPS  60
RILSKNSWQL WLQRDKNCLF MIKEDWDEFV DDNLLGSDDT LVFTHQGTMY FQVRIFKKDG  120
KEVVSAPLKV TEPETEPVLP PKPESSHQEE TTPASASGGR EYVSPLVIKK YDLEFGPHNS  180
SMDFLLPDGD KLEGFAKSYS GLYAFSGWED VCQKYNLKQG DTVVCEFELS GRVVTAVRVH  240
LVSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491315.11e-161PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D92e-72Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A0D3CJ471e-109A0A0D3CJ47_BRAOL; Uncharacterized protein
STRINGBo5g121410.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.35e-68B3 family protein