PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4092_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 482aa    MW: 53448.4 Da    PI: 5.7521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4092_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.71e-961034751373
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfs 94 
                 lv+lL+++A+a    d++  l++ lLa+l+++ sp++ ++m+Rlaa+ft++L++   +   ++ ++   +  +++ ++ ++++ a+++++++sP+++f+
  RrC4092_p1 103 LVHLLVAAADASIGADKTreLTRVLLAKLKDMTSPNDrTNMERLAAHFTNGLSKLHKE--ANVQRQYgpHQHPDHVDDKVDVMLAFQMLQNMSPYINFG 199
                 689******997554433349***********9999989*************998887..455555511344444456999999*************** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                 +lta qaIleav+ e+r+Hi+D+di+ G+QWp+L+qaL sR+ gp   +lRiT+++++++g  s  +++e g+rL+ fAe++g pf+++     + +++
  RrC4092_p1 200 YLTATQAILEAVKYERRIHIVDYDITDGVQWPSLMQALVSRDTGPSaqHLRITALSRATNGkkSVAAVQEAGRRLTAFAESIGQPFSYHH-CRMDSDTF 297
                 ******************************************765446*********999999999***********************9.7889**** PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvEr 287
                 ++++L++ +gEa+++n++l+l r+ +++ ++     ++L+  k+l+Pk+v++v++e+ + +++ Fl rf++ l+ +sa+fdsle++      +r +vEr
  RrC4092_p1 298 NPSSLKLVRGEAVVINCMLHLPRFGHQPPNSII---SFLSEAKTLNPKLVTLVHEEVGLmGNQGFLYRFMDLLHQFSAIFDSLEEG-----PARGFVER 388
                 *************************99888888...9*********************99***********************999.....8******* PP

        GRAS 288 ellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 +++g++++ +++        ++ e++++W  +l + GFkpv++s  + +qaklll+ ++ dgy vee  ++ lvlgWk+r+Lvs+S+W
  RrC4092_p1 389 VIFGPWVSGWLTRIAITdDGAEVESVASWPLWLASNGFKPVEVSFANRCQAKLLLSLFN-DGYGVEELgKNGLVLGWKSRRLVSASFW 475
                 **********998765536789*************************************.******98688999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.12677456IPR005202Transcription factor GRAS
PfamPF035143.6E-94103475IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.802.3E-4177217No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MTMNHPYDDF PHLLFSNNTA TATSTSSCVE QHDGISLDMD WDCDFHDLIE SMMSDKGATT  60
ESPPLLPCYH GQEGIFNSSS TGSSMADELD HDVEAGESKG LRLVHLLVAA ADASIGADKT  120
RELTRVLLAK LKDMTSPNDR TNMERLAAHF TNGLSKLHKE ANVQRQYGPH QHPDHVDDKV  180
DVMLAFQMLQ NMSPYINFGY LTATQAILEA VKYERRIHIV DYDITDGVQW PSLMQALVSR  240
DTGPSAQHLR ITALSRATNG KKSVAAVQEA GRRLTAFAES IGQPFSYHHC RMDSDTFNPS  300
SLKLVRGEAV VINCMLHLPR FGHQPPNSII SFLSEAKTLN PKLVTLVHEE VGLMGNQGFL  360
YRFMDLLHQF SAIFDSLEEG PARGFVERVI FGPWVSGWLT RIAITDDGAE VESVASWPLW  420
LASNGFKPVE VSFANRCQAK LLLSLFNDGY GVEELGKNGL VLGWKSRRLV SASFWASCES  480
SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-4111447529378Protein SCARECROW
5b3h_A7e-4111447528377Protein SCARECROW
5b3h_D7e-4111447528377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2425540.0JX242554.1 Brassica rapa isolate BrNSP2chiifu nodulation signaling pathway 2-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455658.10.0PREDICTED: scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLM4CFB20.0M4CFB2_BRARP; Uncharacterized protein
STRINGBra002894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein