PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4156_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 371aa    MW: 41861.9 Da    PI: 6.0895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4156_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.4e-50161561128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                 +ppGfrFhPt+eel+++yL+kkv++ k++l +vi++vd++k+ePwd++               k+ +  +++wyfFs++dkky+tg+r+nrat++g+Wk
  RrC4156_p1  16 VPPGFRFHPTEEELLQYYLRKKVNSIKIDL-DVIRDVDLNKLEPWDIQGllklkacfyinemcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTAGFWK 113
                 69****************************.9***************955789999988876633333556**************************** PP

         NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 atg+dk ++s +g+ +g++ktLvfykgrap+g+k+dW+mheyrl
  RrC4156_p1 114 ATGRDKIIYS-NGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 156
                 **********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5610192IPR003441NAC domain
PROSITE profilePS5100554.99316192IPR003441NAC domain
PfamPF023652.1E-2717156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMSESMSISV NGQSQVPPGF RFHPTEEELL QYYLRKKVNS IKIDLDVIRD VDLNKLEPWD  60
IQGLLKLKAC FYINEMCKIG TTPQNDWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKI  120
IYSNGRRIGM RKTLVFYKGR APHGQKSDWI MHEYRLDDNI ISSEDVTLCE VVTVTGEASQ  180
DEGWVVCRIF KKKNLHKTLN SSVGEASLSG GGDMARATSS SQMSTDDTIE QFLELMGRSC  240
KEELNLDPFM KLPNLESTSS QTVNNNCHVN SPDTYHDIHV NNVVDTSFVT SWAAFDRLVA  300
SQLNGPISYS ITTVDESHVE QDHLALPSIN RSGSYHAGLI QEYTPEMELW NPTSSLLSSS  360
DSFRHVSNDS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-461319414167NO APICAL MERISTEM PROTEIN
1ut4_B3e-461319414167NO APICAL MERISTEM PROTEIN
1ut7_A3e-461319414167NO APICAL MERISTEM PROTEIN
1ut7_B3e-461319414167NO APICAL MERISTEM PROTEIN
4dul_A3e-461319414167NAC domain-containing protein 19
4dul_B3e-461319414167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439286.10.0PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP60.0NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A3P6C7X80.0A0A3P6C7X8_BRAOL; Uncharacterized protein
STRINGBra004509.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.10.0NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]