PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4217_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 375aa MW: 42465 Da PI: 9.9153

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4217_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	8.9e-10	91	131	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L RrC4217_p2 91 KTVRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 131 667999**********************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-8	87	150	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.438	89	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.14E-7	91	134	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-8	91	136	No hit	No description
Pfam	PF00170	8.3E-7	91	131	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	94	109	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.9E-32	174	249	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009863	Biological Process	salicylic acid mediated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MVVLFCNNKR IGFVMTKRRL IGDWNFRSCL SFSLFLVSKV NRDLDEKNRM GDTSPRTSGS 60 TDGDMDQNNL MYDGGHVGES SDRSKEKLDQ KTVRRLAQNR EAARKSRLRK KAYVQQLENS 120 RLKLTQLEQE LQRARQQGVF ISSSGDQSHS TAGNGAMAFD AEYRRWQEDK NRKMKEMSSA 180 LDSHASEAEL RIIVEAVLAH YEELFRIKSN AAKNDVFHLL SGMWKTPAER CFLWLGGFRS 240 SDLLKLIASQ VEPLTEQQSQ DLNNLQESSQ QAEDALSQGM DSLQQSLSET LSSGTLGSSS 300 SGNVANYMGQ MAMAMGKLGT LEGFIRQADN LRLQTYQQML RKLTTRQSAR ALLAIHEYSL 360 RLRALSSLWL ARPRE

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MVVLFCNNKR IGFVMTKRRL IGDWNFRSCL SFSLFLVSKV NRDLDEKNRM GDTSPRTSGS  60
TDGDMDQNNL MYDGGHVGES SDRSKEKLDQ KTVRRLAQNR EAARKSRLRK KAYVQQLENS  120
RLKLTQLEQE LQRARQQGVF ISSSGDQSHS TAGNGAMAFD AEYRRWQEDK NRKMKEMSSA  180
LDSHASEAEL RIIVEAVLAH YEELFRIKSN AAKNDVFHLL SGMWKTPAER CFLWLGGFRS  240
SDLLKLIASQ VEPLTEQQSQ DLNNLQESSQ QAEDALSQGM DSLQQSLSET LSSGTLGSSS  300
SGNVANYMGQ MAMAMGKLGT LEGFIRQADN LRLQTYQQML RKLTTRQSAR ALLAIHEYSL  360
RLRALSSLWL ARPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00493	DAP	Transfer from AT5G06960	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058830	0.0	AY058830.1 Arabidopsis thaliana AT5g06960/MOJ9_13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449222.1	0.0	PREDICTED: transcription factor TGA5
Refseq	XP_018449230.1	0.0	PREDICTED: transcription factor TGA5
Swissprot	Q39163	0.0	TGA5_ARATH; Transcription factor TGA5
TrEMBL	A0A3P6D1E4	0.0	A0A3P6D1E4_BRAOL; Uncharacterized protein
STRING	Bo2g007460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06960.2	1e-170	OCS-element binding factor 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Huang LJ, et al. Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana. BMC Plant Biol., 2016. 16(1): p. 200 [PMID:27624344]