PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC42264_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 188aa MW: 21461.4 Da PI: 7.566

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC42264_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.4	3e-33	124	180	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++prsYY+Ct++gC vkk+versaed+++v +tYeg+Hnh+ RrC42264_p1 124 DGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVKKQVERSAEDERAVLTTYEGRHNHD 180 9*******************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.0E-35	107	182	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-29	114	182	IPR003657	WRKY domain
PROSITE profile	PS50811	33.522	117	182	IPR003657	WRKY domain
SMART	SM00774	6.0E-38	122	181	IPR003657	WRKY domain
Pfam	PF03106	5.8E-26	124	180	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
KKIVETASDG QVTEIIYKGG HNHPKPEFTK RPSSSSANXR RMFNPSSVAS DQSESSSISF 60 DYSDLEQKSF KSEYGEIEEE NEQPEIKRQK REGEDEGMSV EVSRGVKEPR VVVQTISEID 120 VLIDGFRWRK YGQKVVKGNT NPRSYYKCTY QGCGVKKQVE RSAEDERAVL TTYEGRHNHD 180 IPTSLRRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-35	113	182	8	77	Probable WRKY transcription factor 4
2lex_A	4e-35	113	182	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250\|UniProtKB:Q9SI37, ECO:0000269\|PubMed:18839316, ECO:0000269\|PubMed:19125253, ECO:0000269\|PubMed:21336597}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269\|PubMed:18839316, ECO:0000269\|PubMed:19125253}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430043	0.0	KF430043.1 Brassica rapa WRKY transcription factor 25 (WRKY25) mRNA, complete cds.
GenBank	KM593166	0.0	KM593166.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY140) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295580.1	1e-119	probable WRKY transcription factor 25
Swissprot	O22921	1e-109	WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBL	R0HWQ3	1e-118	R0HWQ3_9BRAS; Uncharacterized protein
STRING	Bostr.24513s0217.1.p	1e-119	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27674	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30250.1	1e-96	WRKY DNA-binding protein 25

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]