PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4240_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 177aa    MW: 20562.8 Da    PI: 10.6122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4240_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.82.3e-32151411128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkge 98 
                 lp+G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   ++ee++ yfF+k++++ ++  +r + +  +gyWka  k++ev++  g+
  RrC4240_p3  15 LPVGYRFHPTEQELILHYLLPKALASRLPS-SIIPVFDVFVSHPLTFPG--DQEERQRYFFCKKRQEVSSnAHRIKTSSGDGYWKAIRKEREVIA-CGR 109
                 799************************999.88***************3..4577899*****99988751556666888***************.999 PP

         NAM  99 lvglkktLvfy..kgrapkgektdWvmheyrl 128
                 +vg+++t vfy  ++++ + +kt+W+m ey+l
  RrC4240_p3 110 TVGIRRTRVFYgtNNSSANCNKTRWCMTEYSL 141
                 ***********7656777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3810161IPR003441NAC domain
PROSITE profilePS5100536.57515161IPR003441NAC domain
PfamPF023651.2E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEVGKRIMVN GGMKLPVGYR FHPTEQELIL HYLLPKALAS RLPSSIIPVF DVFVSHPLTF  60
PGDQEERQRY FFCKKRQEVS SNAHRIKTSS GDGYWKAIRK EREVIACGRT VGIRRTRVFY  120
GTNNSSANCN KTRWCMTEYS LAGFASTKVF GEWAVYKVYK RKESKRKKAE EIKRERS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-231316713174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467010.11e-114PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A3P6AFH21e-103A0A3P6AFH2_BRAOL; Uncharacterized protein
STRINGBo3g009490.11e-99(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-94NAC domain containing protein 84