PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4249_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 82aa MW: 8850.07 Da PI: 8.2436

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4249_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.5	2.4e-15	2	40	11	49
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 vtf+kR+ngi K +ELSvLC+a+v +i+s +gk +++ RrC4249_p1 2 VTFCKRKNGIYTKLSELSVLCGADVGFLIYSGSGKPFTF 40 9**********************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	2.2E-17	1	40	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.142	1	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-17	2	57	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.3E-8	2	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-9	6	21	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-9	21	42	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MVTFCKRKNG IYTKLSELSV LCGADVGFLI YSGSGKPFTF GSPSFDVVAQ RFLHGNHHPG 60 VTSGEGNSSL SSMIVDHGYI FF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474462.1	6e-50	PREDICTED: agamous-like MADS-box protein AGL29
Refseq	XP_018474473.1	6e-50	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A397XXX9	2e-39	A0A397XXX9_BRACM; Uncharacterized protein
STRING	Bo5g061120.1	4e-39	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	1e-26	AGAMOUS-like 64