PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC424_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 238aa    MW: 27272 Da    PI: 8.7249
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC424_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071e-332377155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprlrWt eLHerFv+av++LGG++kAtPkti+++m vkgLtl+h+kSHLQk+Rl
  RrC424_p4 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMAVKGLTLYHLKSHLQKFRL 77
               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-322078IPR009057Homeodomain-like
PROSITE profilePS5129411.9652080IPR017930Myb domain
SuperFamilySSF466897.17E-172278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-242378IPR006447Myb domain, plants
PfamPF002491.1E-62575IPR001005SANT/Myb domain
PfamPF143792.8E-14133172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MMQSREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMAV  60
KGLTLYHLKS HLQKFRLGKQ PHKEHSHGHS INIRDSNKAV NHRSMTHAAS MLDLQRNVVF  120
TTPQIIGRNM NEMQMEVKRR IEEEVEVERQ VNQRIEAQGK YMESMLEKAC ETQEASLTKD  180
YSTLFFNNTS PLPILWFEDH FPSASSMDST LNLSDINPNF SLQDSLSSIT KNRTVCLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-202376154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893351e-146AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489034.11e-159PREDICTED: myb family transcription factor PHL12
SwissprotQ8VYI21e-141PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A3P5ZEW21e-161A0A3P5ZEW2_BRACM; Uncharacterized protein
STRINGBo5g133200.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-127G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]