PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC426_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 18820.6 Da    PI: 10.1213
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC426_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr+g+lKKA+E+SvLCdaev++i+fs++gkl+eyss
  RrC426_p8  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVSLIVFSHKGKLFEYSS 59
               79***********************************************96 PP
2K-box91.31.7e-3085159983
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                   +   +++ e+++Lk++ie L+r+qRh+lGedLes+s+keLq+LeqqL++slk+iRs+Kn+l++e++++lq+k
  RrC426_p8  85 SPVNAKTNWSMEYSRLKAKIELLERNQRHYLGEDLESISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRK 159
                45566789*****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.20E-41279No hitNo description
SuperFamilySSF554551.06E-34285IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2687159IPR002487Transcription factor, K-box
PROSITE profilePS5129714.57290159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVSLIVFSH KGKLFEYSSE  60
SCMEKVLERY ERYSYAEKQL KAPDSPVNAK TNWSMEYSRL KAKIELLERN QRHYLGEDLE  120
SISIKELQNL EQQLDTSLKH IRSRKNQLMH ESLNHLQRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-22174173MEF2 CHIMERA
6byy_B2e-22174173MEF2 CHIMERA
6byy_C2e-22174173MEF2 CHIMERA
6byy_D2e-22174173MEF2 CHIMERA
6bz1_A2e-22174173MEF2 CHIMERA
6bz1_B2e-22174173MEF2 CHIMERA
6bz1_C2e-22174173MEF2 CHIMERA
6bz1_D2e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269|PubMed:10765981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5140450.0AY514045.1 Brassica rapa var. communis DNA binding protein (CAL) mRNA, complete cds.
GenBankAY5140480.0AY514048.1 Brassica rapa subsp. rapa DNA binding protein (CAL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449538.11e-111PREDICTED: transcription factor CAULIFLOWER isoform X2
RefseqXP_018451393.11e-111PREDICTED: transcription factor CAULIFLOWER isoform X2
SwissprotQ9SBK91e-110CAL_BRARP; Transcription factor CAULIFLOWER
TrEMBLA0A078HE541e-109A0A078HE54_BRANA; BnaA08g19710D protein
TrEMBLA0A397YDR71e-109A0A397YDR7_BRACM; Uncharacterized protein
STRINGBra011021.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-104MIKC_MADS family protein
Publications ? help Back to Top
  1. Li XF,Shen RJ,Liu PL,Tang ZC,He YK
    Molecular characters and morphological genetics of CAL gene in Chinese cabbage.
    Cell Res., 2000. 10(1): p. 29-38
    [PMID:10765981]