PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4281_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 603aa MW: 67496.9 Da PI: 7.9313

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4281_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.6	2.5e-28	363	413	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l+++Fs+++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ RrC4281_p1 363 EKNVSLRVLQQHFSGSLKDAARSIGVCPTTLKRICRQHGIMRWPSRKINKV 413 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.392	349	433	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	365	413	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.32E-22	496	587	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.5E-23	500	582	No hit	No description
PROSITE profile	PS51745	21.008	503	585	IPR000270	PB1 domain
SMART	SM00666	4.7E-23	503	585	IPR000270	PB1 domain
CDD	cd06407	4.31E-37	504	583	No hit	No description
Pfam	PF00564	1.1E-17	504	583	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MSYSLDRDEL SGKRRSVLNC TIPRSLSHSL DEKMLKALSL FMQLSGSGEG VLAQVWTPVK 60 TGDQYMLTTC DQAYLLDPRL TQYREVSRNF KFASQPDQCS YPGLPGRVFI SGVREWTSNV 120 MYYKKDEYLR VKHAIDNEVR GSIAIPILEA ASGASCCAVM EIITSHEKVN FDTEMDSAVN 180 LRTSVVPRPQ YLSSNQRDAL AEIQDVLRAL CHAHKLPLAL TWIPNSGEHN RVLCVEETAC 240 YVNDMEMEGF VHACLDHPLR EKEGIVGKAF VSNQPFFSSD VKAYDISEYP LVHHARKYGL 300 NAAVAVKLRS THTGEDDYIL ELFLPLSMKG SLEQQLLLDC LSDTMQRNMS KAITPEKKKG 360 SIEKNVSLRV LQQHFSGSLK DAARSIGVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI 420 QTDMAKDTSL CELLKAKSVD NAIKLEDDII TNGSFMEVNA NRSNSDSSNG SGAAMLRSSS 480 PSMDNRNQMR TQKGNSSESG SSTLTVKATY REDTTRFKFE PSVGCLQLYR EVGKRFRLQD 540 GSFQLKYLDD EEEWVMLVTD SDLQECLEIL YGMGKHTVKF LVRNLPAHIG SSAGSNGYLG 600 AGL

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MSYSLDRDEL SGKRRSVLNC TIPRSLSHSL DEKMLKALSL FMQLSGSGEG VLAQVWTPVK  60
TGDQYMLTTC DQAYLLDPRL TQYREVSRNF KFASQPDQCS YPGLPGRVFI SGVREWTSNV  120
MYYKKDEYLR VKHAIDNEVR GSIAIPILEA ASGASCCAVM EIITSHEKVN FDTEMDSAVN  180
LRTSVVPRPQ YLSSNQRDAL AEIQDVLRAL CHAHKLPLAL TWIPNSGEHN RVLCVEETAC  240
YVNDMEMEGF VHACLDHPLR EKEGIVGKAF VSNQPFFSSD VKAYDISEYP LVHHARKYGL  300
NAAVAVKLRS THTGEDDYIL ELFLPLSMKG SLEQQLLLDC LSDTMQRNMS KAITPEKKKG  360
SIEKNVSLRV LQQHFSGSLK DAARSIGVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI  420
QTDMAKDTSL CELLKAKSVD NAIKLEDDII TNGSFMEVNA NRSNSDSSNG SGAAMLRSSS  480
PSMDNRNQMR TQKGNSSESG SSTLTVKATY REDTTRFKFE PSVGCLQLYR EVGKRFRLQD  540
GSFQLKYLDD EEEWVMLVTD SDLQECLEIL YGMGKHTVKF LVRNLPAHIG SSAGSNGYLG  600
AGL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477361.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A078GAA4	0.0	A0A078GAA4_BRANA; BnaC04g48980D protein
STRING	Bra037711.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]