PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4331_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 401aa MW: 43463.1 Da PI: 7.0078

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4331_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.7	4e-35	48	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.............. 77 lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ RrC4331_p3 48 LPAGVKFDPTDQELI-EHLEAKVLVKEMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnslhgsss 144 799**********.99*99995443233444334666646******.555666799**************879999999999877 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l RrC4331_p3 145 SGETRWHKTGKTRPVML-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 196 66788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-39	40	215	IPR003441	NAC domain
PROSITE profile	PS51005	32.866	48	215	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	49	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MNKSNPAGSV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPQNWVGLPA GVKFDPTDQE 60 LIEHLEAKVL VKEMKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECDNSLH GSSSSGETRW HKTGKTRPVM LNGKQKGCKK ILVLYTNFGK 180 NRKPEKTNWV MHQYHLGTHE EEREGELVVS KIFYQTQPRQ CNWSSSTSSL NAIGGGGGGG 240 EANSGGGGGE YNMRRDSGTT SGGSCSSSRE IINVNPTNRS DIVGGVGGGA MAVAAAAAAV 300 VAGLPSYSMD QLSFVPFMKS FDEAQQQQDH ERDEQHNDGK MGGRSASGLE ELIMGCSSSN 360 THHDVKDGSS SMGNQQEAEW LKYSTTFWPA PDSSGNQDHH G

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MNKSNPAGSV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPQNWVGLPA GVKFDPTDQE  60
LIEHLEAKVL VKEMKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECDNSLH GSSSSGETRW HKTGKTRPVM LNGKQKGCKK ILVLYTNFGK  180
NRKPEKTNWV MHQYHLGTHE EEREGELVVS KIFYQTQPRQ CNWSSSTSSL NAIGGGGGGG  240
EANSGGGGGE YNMRRDSGTT SGGSCSSSRE IINVNPTNRS DIVGGVGGGA MAVAAAAAAV  300
VAGLPSYSMD QLSFVPFMKS FDEAQQQQDH ERDEQHNDGK MGGRSASGLE ELIMGCSSSN  360
THHDVKDGSS SMGNQQEAEW LKYSTTFWPA PDSSGNQDHH G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161574	0.0	AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481126.1	0.0	PREDICTED: uncharacterized protein LOC108852126 isoform X1
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M4D3N6	0.0	M4D3N6_BRARP; Uncharacterized protein
STRING	Bra011090.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	0.0	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]