PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4340_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 193aa MW: 21845.4 Da PI: 7.0007

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4340_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.8	7.8e-11	99	135	1	38
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 rg W + Ed +l+++v+ +G+ +W++Ia++++ gR+++ RrC4340_p3 99 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGY 135 899***************************.*97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.34E-9	91	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-12	91	134	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.015	94	144	IPR017930	Myb domain
Pfam	PF00249	1.9E-9	99	134	IPR001005	SANT/Myb domain
CDD	cd00167	3.79E-8	102	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MGMEIAHTNV SSPSITPHFP SSSHPLTNNI VMSKDHHRWM DQIASWQYFS LNNDKGHYYA 60 SQGEEDMKNP NRCNCSNSSK KERGDCGSCR NSLKASVSRG HWRPAEDAKL KELVAVYGPQ 120 NWNLIAEKLQ GRSGYGHGMF ENQMMVDDYS SRTREAATKF DLLSQTGKCE MLDESMSEKK 180 EPHFFDFLGL GTV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	1e-119	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455346.1	5e-96	PREDICTED: transcription repressor MYB6-like
Refseq	XP_018455371.1	5e-96	PREDICTED: transcription repressor MYB6-like
Swissprot	Q9SEZ4	4e-41	MY105_ARATH; Transcription factor MYB105
TrEMBL	M4CJL0	2e-74	M4CJL0_BRARP; Uncharacterized protein
STRING	Bra004394.1-P	3e-75	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1210	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-43	myb domain protein 105

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]