PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC438_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 206aa    MW: 23553.6 Da    PI: 5.3242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC438_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.4e-0884125447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      W  +E+e ++ + +++G + W++Ia  +g ++t+ q+  + +k+
        RrC438_p1  84 WDIDEHEWFLIGLRRYGRK-WDKIAVLLG-TKTPMQVAIYARKF 125
                      899**************99.*********.****9998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.067253IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-8457IPR009057Homeodomain-like
CDDcd001678.13E-4551No hitNo description
PROSITE profilePS512939.47779130IPR017884SANT domain
SMARTSM007171.7E-480128IPR001005SANT/Myb domain
SuperFamilySSF466892.03E-881127IPR009057Homeodomain-like
CDDcd001674.56E-584126No hitNo description
PfamPF002491.4E-584124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-484119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAANSWTKED NELFKNAVEC FSAFSPNRFE RIAHFVWRPV VDVIEHYQEM VDDLLEIRSS  60
QIALSNGMFD AVLPSWCLVE KPIWDIDEHE WFLIGLRRYG RKWDKIAVLL GTKTPMQVAI  120
YARKFFTWHN PGNNVMKRRR TMEITMGDTS VDSSSPRKRT SGDINVDSTG QHESLVPLQP  180
QPQQGPVALE TGQDASISDS ESNNLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435335.11e-133PREDICTED: uncharacterized protein LOC108807556
TrEMBLA0A398ATA41e-100A0A398ATA4_BRACM; Uncharacterized protein
STRINGBra034131.1-P4e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-22MYB family protein