PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4452_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 243aa MW: 28176.2 Da PI: 6.8914

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4452_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.6	6.9e-25	120	169	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s+e++s+yF++pi++AA eL+v+lT+LKr+CR++G +RWPhRk+ sl RrC4452_p3 120 KALSMETISRYFYMPITQAATELDVGLTLLKRRCRELGFARWPHRKLMSL 169 789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.586	102	190	IPR003035	RWP-RK domain
Pfam	PF02042	4.8E-20	122	169	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSYHKLNEEK PFSFLPYSPS FDDIHSSLTY PSLEWEEEHL FMNNSVYEAF PLPTPSLPLP 60 DLEPLSLDVL DSYSSWNVTE QNRGEGDLEM NTEHEAVQEK PNQRKLNRDI TTNTAISTPK 120 ALSMETISRY FYMPITQAAT ELDVGLTLLK RRCRELGFAR WPHRKLMSLL ALISKAKKME 180 GGEKAGKLKN ALLEMLENRK RMIEENPDLE FDDKTKRLRQ ACFKATHKMK KKASLKSDHF 240 SEF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460348.1	1e-167	PREDICTED: protein RKD2-like
Refseq	XP_018460357.1	1e-167	PREDICTED: protein RKD2-like
Swissprot	Q9CA66	6e-90	RKD2_ARATH; Protein RKD2
TrEMBL	A0A3P6AX93	1e-136	A0A3P6AX93_BRACM; Uncharacterized protein
TrEMBL	M4CVA6	1e-136	M4CVA6_BRARP; Uncharacterized protein
STRING	Bra008153.1-P	1e-136	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	5e-68	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]