PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4459_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 346aa MW: 39822.9 Da PI: 4.2477

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4459_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	59.6	8.8e-19	35	111	22	97
DUF573 22 fkaktgkspsddida.fyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++++t+ s ++ da fy +vk+ i++++sk+ql++Kir+L ++f +++++ ++++ psf++++d++if+ls++iW+ RrC4459_p1 35 YEKETKLSHRSERDAlFYGYVKDFIEAEFSKNQLIDKIRNLNRRFLGNKARCDDEEGPSFTSTEDDEIFKLSMIIWD 111 677888877776665489**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.2E-14	36	111	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MLRRRKQAKK TETVSLRVTD KSDAETHREF ENRVYEKETK LSHRSERDAL FYGYVKDFIE 60 AEFSKNQLID KIRNLNRRFL GNKARCDDEE GPSFTSTEDD EIFKLSMIIW DTANETECGS 120 GENVGLAKVS FVCLVLMFIA WTVNVDQANV DAPSVEHEPV NENMDQAKDA PSVEHERVDV 180 DENMEQEKDA PCEEHERVDK NMDQEEAIPC TEDEPLSNDA LTDKENNEED GVDEFCVLKE 240 TDKENNEEDG VDEFCALKDA LTDKEEREKN EDEYCALTDA FEATTFFQSI GKYQQNLLIG 300 NLKNLRGPRR KELADELKEL LDEEMKLRAK KLSLSAKLAN AWESSC

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MLRRRKQAKK TETVSLRVTD KSDAETHREF ENRVYEKETK LSHRSERDAL FYGYVKDFIE  60
AEFSKNQLID KIRNLNRRFL GNKARCDDEE GPSFTSTEDD EIFKLSMIIW DTANETECGS  120
GENVGLAKVS FVCLVLMFIA WTVNVDQANV DAPSVEHEPV NENMDQAKDA PSVEHERVDV  180
DENMEQEKDA PCEEHERVDK NMDQEEAIPC TEDEPLSNDA LTDKENNEED GVDEFCVLKE  240
TDKENNEEDG VDEFCALKDA LTDKEEREKN EDEYCALTDA FEATTFFQSI GKYQQNLLIG  300
NLKNLRGPRR KELADELKEL LDEEMKLRAK KLSLSAKLAN AWESSC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466506.1	1e-140	PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X5
TrEMBL	A0A397ZWE8	1e-133	A0A397ZWE8_BRACM; Uncharacterized protein
STRING	Bra017244.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-44	DNA-binding storekeeper protein-related transcriptional regulator