PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC44649_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 169aa    MW: 18668.2 Da    PI: 6.8781
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC44649_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS200.88.2e-621164205374
         GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                  n+v++lh+ll +++ +e+    vL +vk+++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle      s++++++++++lg++i+n+vaceg
  RrC44649_p1   1 NSVFELHKLLGRPGGIEK----VLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEGV---PSSQDKVMSEVYLGKQICNLVACEG 91 
                  89***********99999....*********************************************998...69999******************** PP

         GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  a+r+erhetl++W +r++++GF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  RrC44649_p1  92 ADRVERHETLSQWANRFGSSGFAPAHLGSNAFKQASMLLALFNgGEGYRVEENNGCLMLGWHTRPLITTSAWK 164
                  ************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.341143IPR005202Transcription factor GRAS
PfamPF035142.9E-591164IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
NSVFELHKLL GRPGGIEKVL GVVKQIKPVI FTVVEQESSH NGPVFLDRFT ESLHYYSTLF  60
DSLEGVPSSQ DKVMSEVYLG KQICNLVACE GADRVERHET LSQWANRFGS SGFAPAHLGS  120
NAFKQASMLL ALFNGGEGYR VEENNGCLML GWHTRPLITT SAWKLSTAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-247163222378Protein SCARECROW
5b3h_A3e-247163221377Protein SCARECROW
5b3h_D3e-247163221377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3319250.0AB331925.1 Brassica rapa var. perviridis BrGAI mRNA for GRAS family transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456905.11e-119PREDICTED: DELLA protein RGA2
SwissprotQ5BN221e-119RGA2_BRACM; DELLA protein RGA2
TrEMBLB1Q3B11e-116B1Q3B1_BRACM; GRAS family transcription factor (Fragment)
TrEMBLE4MVL71e-116E4MVL7_EUTHA; mRNA, clone: RTFL01-02-P11
TrEMBLV4KPE31e-116V4KPE3_EUTSA; Uncharacterized protein
STRINGXP_006395878.11e-117(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-116GRAS family protein