PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4494_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 116aa MW: 13078.1 Da PI: 9.8118

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4494_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.1	4.7e-29	15	64	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQ RrC4494_p1 15 PRLRWNCDLHNSFVQAVEQLGGEHRATPKMVLQLMDVRGLTISHVKSHLQ 64 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.352	11	71	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-26	11	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-12	13	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-21	15	65	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MKTPIIRSYV RSKVPRLRWN CDLHNSFVQA VEQLGGEHRA TPKMVLQLMD VRGLTISHVK 60 SHLQVRVSKR RADDDNGKIV CDTRDDGNVV TVSLNSIKAS KCEEELSLEL TLGLKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	16	64	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	16	64	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF074021	4e-34	AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBank	AL161501	4e-34	AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBank	CP002687	4e-34	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018462826.1	1e-39	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q700D9	5e-24	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A078JWF3	4e-40	A0A078JWF3_BRANA; BnaCnng71310D protein
STRING	Bra018498.1-P	3e-40	(Brassica rapa)
STRING	Bo2g104640.1	1e-38	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	7e-28	G2-like family protein