PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4516_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 188aa MW: 21496.5 Da PI: 10.5019

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4516_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.7	4.2e-11	72	116	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W + E+++++++ ++ G+g+ k+I+r + k Rt+ q+ s+ qky RrC4516_p1 72 AWKESEHKRFLRGLQRVGKGDSKAISRNFVKSRTPTQVASHAQKY 116 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-14	64	121	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-16	68	119	IPR006447	Myb domain, plants
SMART	SM00717	1.4E-5	69	119	IPR001005	SANT/Myb domain
CDD	cd00167	2.40E-5	72	117	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-6	72	116	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-6	72	116	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MLFGVRVVVD SMRKCVSLNN LSDYEKSSPE EEMQKTKPNR MPVTPPPSDD CIRLIRCLYW 60 LVDYCLDKTG VAWKESEHKR FLRGLQRVGK GDSKAISRNF VKSRTPTQVA SHAQKYFLRR 120 TNLNRRTNLK IFHINHSANP SFNLNRDAAP LSLNLSLSFN LNEPSNSRHS IMPSFSDGDS 180 NSNIIRVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013599652.1	1e-63	PREDICTED: transcription factor MYB1R1-like isoform X1
Swissprot	Q2V9B0	6e-27	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A3N6RCQ8	5e-62	A0A3N6RCQ8_BRACR; Uncharacterized protein
STRING	Bo8g102960.1	4e-62	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	4e-42	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]