PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4527_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 185aa MW: 19870.5 Da PI: 10.5257

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4527_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.1	3.1e-38	11	113	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s + ++++ ss+ RrC4527_p3 11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStASASLRGNSATLSSSldhkpllgsspf 109 79*************************************************************999998874222222222222222344445555555 PP TCP 89 ...k 89 k RrC4527_p3 110 ilgK 113 5550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	16	70	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.2E-34	16	123	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MTNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL 60 RQAEPSIIAA TGTGTTPASF STASASLRGN SATLSSSLDH KPLLGSSPFI LGKRVRADED 120 TPSGFWAAPA RPEFGQVWSF AAGGPQEMFL QQQQAAGLFI HQQQQAAMGE ASAARVGNYL 180 PVLVY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456989.1	1e-114	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	5e-92	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D3E1M3	1e-112	A0A0D3E1M3_BRAOL; Uncharacterized protein
STRING	Bo9g014260.1	1e-112	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-76	TCP family protein