PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4535_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 176aa    MW: 20221.2 Da    PI: 10.7707
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4535_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.12.5e-21139450128
         NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++k++ + wyf s+++ ++++++ ++r+t sg+Wk+tg+d++v +    +g ++g+kktLv+++g+++++++t W+mhe+++
  RrC4535_p1  13 TIKSKYHVWYFLSPKEYTSTKKNVTKRTTPSGFWKSTGNDRNVRKDkrkNGVVIGTKKTLVYHEGKSSSAVRTPWTMHEFNI 94 
                 56677789***********************************9975656667***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.0531119IPR003441NAC domain
SuperFamilySSF1019411.29E-221697IPR003441NAC domain
PfamPF023654.0E-122093IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MIDRRYDQRA LSTIKSKYHV WYFLSPKEYT STKKNVTKRT TPSGFWKSTG NDRNVRKDKR  60
KNGVVIGTKK TLVYHEGKSS SAVRTPWTMH EFNITCLPPV DQLHFFGVSS LIIFPMGQRK  120
TDQEKSPIQQ DKRKLQKVIE SETKQRSCSS TAKTTLLCSN RFDTLRDSPL TAVVSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509805.11e-45PREDICTED: NAC domain-containing protein 69-like
SwissprotA8MQY12e-32NAC68_ARATH; NAC domain-containing protein 68
TrEMBLA0A078J8N81e-42A0A078J8N8_BRANA; BnaA09g51630D protein
TrEMBLA0A397XPX69e-43A0A397XPX6_BRACM; Uncharacterized protein
TrEMBLA0A3P5XTX41e-42A0A3P5XTX4_BRACM; Uncharacterized protein
TrEMBLM4F5H21e-42M4F5H2_BRARP; Uncharacterized protein
STRINGBra036328.1-P2e-43(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2195845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01520.12e-35NAC domain containing protein 67
Publications ? help Back to Top
  1. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]