PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4552_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 193aa    MW: 22344.1 Da    PI: 10.6548
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4552_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.41.3e-07109167462
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 ++r +r++kNRe+A rsR+RK++ +  +     +L a   +L   +++l+ke a+lk +
  RrC4552_p1 109 DRRRKRMIKNRESAARSRARKQECLSPYSSSPYQLHAYTNQLEIAISHLQKENARLKRQ 167
                 799**********************************9999***********9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.5E-12101173No hitNo description
SMARTSM003384.1E-5106180IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.301108171IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-6110166No hitNo description
CDDcd147072.54E-19110178No hitNo description
PROSITE patternPS000360113128IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTQVTMEEVW KEINLASLQH RQLNINHEPM LSNQNPNNSI FKDFLNKPLN QEPPPSSSTT  60
LHRSLPPSPP ETVLSLNPRS INTHFDESAR FGCFGKKRGG QDSDESRGDR RRKRMIKNRE  120
SAARSRARKQ ECLSPYSSSP YQLHAYTNQL EIAISHLQKE NARLKRQEEQ LKMAEATQHQ  180
AKRKLQRSWT APF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195113KKRGGQDSDESRGDRRRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771482e-43GQ177148.1 Arabidopsis thaliana ecotype Ll-0 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435403.11e-122PREDICTED: bZIP transcription factor 27-like
RefseqXP_018436513.11e-122PREDICTED: bZIP transcription factor 27-like
SwissprotQ7PCC67e-78FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A078GCZ81e-119A0A078GCZ8_BRANA; BnaA07g03000D protein
TrEMBLA0A3P6BCR91e-119A0A3P6BCR9_BRACM; Uncharacterized protein
STRINGBo9g024710.15e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.24e-78basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]