PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4553_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 249aa    MW: 27849.3 Da    PI: 5.1174
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4553_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-20109159255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr ++ +g+++AeIrdp   + + +r++lg+f+ta eAa+a+++a+ kl+g
  RrC4553_p1 109 HYRGVRMRP-WGKFAAEIRDP---NrRGTRIWLGTFDTAIEAARAYDQAAFKLRG 159
                 69*******.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.2E-36109173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32109168IPR001471AP2/ERF domain
PfamPF008471.8E-14109159IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-23109169IPR016177DNA-binding domain
PROSITE profilePS5103223.947109167IPR001471AP2/ERF domain
CDDcd000181.00E-29109167No hitNo description
PRINTSPR003671.5E-10110121IPR001471AP2/ERF domain
PRINTSPR003671.5E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MATPSEASAL SFIKKHLLDE SSPLPNTKPE ITDSLEFEPE AKPEIPLASN QSFTFRPNPR  60
GVSGSASRSN RKPALKIEPP NRTEWIQFAT GDPEPEQLPV HVADEEKGHY RGVRMRPWGK  120
FAAEIRDPNR RGTRIWLGTF DTAIEAARAY DQAAFKLRGS KAIVNFPLEV GTWSTRAEVK  180
RKRDGEEEEE EEVKVVAKVV KTEESHAVET ETSSLTAVDD WDLTEFMSMP LLSPLSPHPP  240
FGYPQLSVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-28109172568ATERF1
3gcc_A5e-28109172568ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448538.11e-143PREDICTED: ethylene-responsive transcription factor 6-like
SwissprotQ8VZ911e-102EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLQ2A9I51e-130Q2A9I5_BRAOL; Ethylene responsive element binding factor, putative
STRINGBo8g049450.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.15e-83ethylene responsive element binding factor 6