PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4559_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 365aa    MW: 41693.6 Da    PI: 5.1462
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4559_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3133.62.9e-41301451124
                 XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekv 99 
                 eel+k+ wk++++lk+lke +k+ l+++ +        k  e ++++ m +aQDgiLkYM k +e cnaqGfvYg + e+gk+v+g+sd+Lr+WWk+ v
  RrC4559_p1  30 EELEKKIWKEKQRLKQLKEISKNGLGKRLS--------KQPEDSNKRMMYQAQDGILKYMSKAIERCNAQGFVYGVVFENGKTVTGSSDNLREWWKDRV 120
                 8**************999999997744443........567899******************************************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXX CS
        EIN3 100 efdrngpaaiskyqaknlilsgess 124
                 +fdrngpaai k+q + +++s +s+
  RrC4559_p1 121 RFDRNGPAAILKHQRQINLSSYGSE 145
                 *************999888876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.8E-4430144No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MFCGLVSNPE LDVCPASLTA LCDDQEMEIE ELEKKIWKEK QRLKQLKEIS KNGLGKRLSK  60
QPEDSNKRMM YQAQDGILKY MSKAIERCNA QGFVYGVVFE NGKTVTGSSD NLREWWKDRV  120
RFDRNGPAAI LKHQRQINLS SYGSEIEPYP PLTFSGESNS NVLGASAETD VLFHESADYD  180
VKEPYHQHVP EVGNNYVNNK RKFEGELGLL FNPRTNLTCE NSYCPYSQPH MGFQDKVLRE  240
NHQMTCPYKA ISFYQPNKPL GIPLSFMTPY QVEMQQQQQV QNIQDQFNLS NTLYRPTAAE  300
RGDNNNDYLS DHQFGLVDNS CPSTSVMNHN HGLVLPANFN GDAETVGMEN NQQNQQEGLP  360
MPWIE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895833e-74AC189583.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469819.11e-145PREDICTED: LOW QUALITY PROTEIN: ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231157e-53EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLA0A078F7T10.0A0A078F7T1_BRANA; BnaA02g05250D protein
TrEMBLM4DUF30.0M4DUF3_BRARP; Uncharacterized protein
STRINGBra020146.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2141635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.16e-49ETHYLENE-INSENSITIVE3-like 2