PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC457_p6

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 689aa MW: 79449.2 Da PI: 7.8241

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC457_p6	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.5e-22	84	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s ++r++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ l+HnH+l RrC457_p6 84 NYYNCYANEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRANDVN-----RVRKETRTGCPAMVRMRQVDNKRWRVVEVALDHNHSL 167 69***************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-19	84	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-23	286	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.606	573	609	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.4E-5	581	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MERSDSGDVD VQASAYLQND ETHDGGGEPL VCTSDHEIDD VVFITQNEQR KSEQQEEEHL 60 VVEGKEFDAP AVGMEFESYD DAYNYYNCYA NEVGFRVRVK NSWFKRRSKE KYGAVLCCSS 120 QGFKRANDVN RVRKETRTGC PAMVRMRQVD NKRWRVVEVA LDHNHSLGGG SSKMMMYKRT 180 GTKRKCADAK TVKVYRARVM DIGNSVTNTT NSTLKKKQFQ NSSSSSPDVL NLRRGDSSAV 240 YNYFCRMQLT NPNFFYLMDI NDEGRLRNVF WADGFSRVSC SYFNDVVFVD NSYISGKFEI 300 PLVTLVGVNH HGQTTLLGCG LLARETVESY HWLLKVWFGL MKCSPQTVVT DRCKPLEVAV 360 SQVFPRCHHR FSLAHIMRKV PEKLGGLGNY DGVRKALTKA VYETLKVVDF EAAWGFMVHS 420 FGVIDNEWLR SLYEDRARWA PVYLIDTFFA GLATCRLGET LSPFFERYVH KQTPLKEFLD 480 KYELALHRKH REETLAELES LALGTTELKT KCSFETQLSR VYTRDVFRKF QVEVEEMYSC 540 FSTTQVHVDG PLVIFLVKER VQGESNRREV RDFEVLYNRS VGEVRCICSC FSFYGYLCRH 600 ALCVLNFNGV EEIPLRYVLP RWRKDYKRVR ASDSGFVDGT DRVQRFDQLY KGAIEVVEEG 660 AVSLDRYKLA MQVLEQALDR VHSVEEKQV

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MERSDSGDVD VQASAYLQND ETHDGGGEPL VCTSDHEIDD VVFITQNEQR KSEQQEEEHL  60
VVEGKEFDAP AVGMEFESYD DAYNYYNCYA NEVGFRVRVK NSWFKRRSKE KYGAVLCCSS  120
QGFKRANDVN RVRKETRTGC PAMVRMRQVD NKRWRVVEVA LDHNHSLGGG SSKMMMYKRT  180
GTKRKCADAK TVKVYRARVM DIGNSVTNTT NSTLKKKQFQ NSSSSSPDVL NLRRGDSSAV  240
YNYFCRMQLT NPNFFYLMDI NDEGRLRNVF WADGFSRVSC SYFNDVVFVD NSYISGKFEI  300
PLVTLVGVNH HGQTTLLGCG LLARETVESY HWLLKVWFGL MKCSPQTVVT DRCKPLEVAV  360
SQVFPRCHHR FSLAHIMRKV PEKLGGLGNY DGVRKALTKA VYETLKVVDF EAAWGFMVHS  420
FGVIDNEWLR SLYEDRARWA PVYLIDTFFA GLATCRLGET LSPFFERYVH KQTPLKEFLD  480
KYELALHRKH REETLAELES LALGTTELKT KCSFETQLSR VYTRDVFRKF QVEVEEMYSC  540
FSTTQVHVDG PLVIFLVKER VQGESNRREV RDFEVLYNRS VGEVRCICSC FSFYGYLCRH  600
ALCVLNFNGV EEIPLRYVLP RWRKDYKRVR ASDSGFVDGT DRVQRFDQLY KGAIEVVEEG  660
AVSLDRYKLA MQVLEQALDR VHSVEEKQV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486989.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A3P5ZFT0	0.0	A0A3P5ZFT0_BRACM; Uncharacterized protein
STRING	Bo6g039630.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]