PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4585_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 341aa    MW: 38412.1 Da    PI: 6.4315
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4585_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.8e-1257111355
         AP2   3 ykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV++++++gr++A+++d  s+n  ++k+ + g ++ ++ Aa+a++ a++k++g
  RrC4585_p1  57 YRGVTRHRWTGRYEAHLWDkNSWNEtQSKKGRQGAYDEEDAAARAYDLAALKYWG 111
                 9******************88889998888888*****99*************98 PP
2AP250.55e-16154205155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  RrC4585_p1 154 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDVAAIEYRG 205
                 89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1555120IPR016177DNA-binding domain
SMARTSM003801.4E-1956125IPR001471AP2/ERF domain
PROSITE profilePS5103219.16456119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1256119IPR001471AP2/ERF domain
PRINTSPR003673.4E-65768IPR001471AP2/ERF domain
PfamPF008473.2E-857111IPR001471AP2/ERF domain
CDDcd000181.56E-24154215No hitNo description
SuperFamilySSF541711.31E-17154215IPR016177DNA-binding domain
PfamPF008471.5E-11154205IPR001471AP2/ERF domain
SMARTSM003809.5E-26155219IPR001471AP2/ERF domain
PROSITE profilePS5103217.965155213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-17155213IPR001471AP2/ERF domain
PRINTSPR003673.4E-6195215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MHVQDSPVMK EISRRSKKTS VDDKTGDEPS ASSVVPKTKR KRRSQPRDAP PQRSSMYRGV  60
TRHRWTGRYE AHLWDKNSWN ETQSKKGRQG AYDEEDAAAR AYDLAALKYW GRDTVLNFPL  120
CNYEEDIKDM ESQSKEEYIG SLRRKSSGFS RGVSKYRGVA KHHHNGRWEA RIGRVFGNKY  180
LYLGTYATQE EAAIAYDVAA IEYRGLNAVT NFDISRYLKL PAPENPIDAA NTPHSDPSPF  240
INPDHHDSSA LSQSQSSSDD NDNDDDRKTK LLKSSSPCSN AEEVIGPATP PEIAPSRRSF  300
PDDIQTYFGC QDSGKVGDDD VIFGGLDSFL TPDFYSEFND C
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459150.0AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBankAY1338800.0AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435322.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D3CAN80.0A0A0D3CAN8_BRAOL; Uncharacterized protein
STRINGBo5g021520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-176ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]