PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4612_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 188aa    MW: 20711.4 Da    PI: 5.8448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4612_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-184090155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  RrC4612_p3 40 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAALCLKG 90
                68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-124090IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-304199IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2141100IPR016177DNA-binding domain
SMARTSM003801.1E-3341104IPR001471AP2/ERF domain
PROSITE profilePS5103222.9324198IPR001471AP2/ERF domain
PRINTSPR003675.1E-124253IPR001471AP2/ERF domain
CDDcd000181.22E-294299No hitNo description
PRINTSPR003675.1E-1280100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKLSPPQPPA LKNNDPTAAA SAVKSCGRGG RETFSTTRHP VYHGVRKRRW GKWVSEIREP  60
RKKSRIWLGS FPVPEMAAKA YDVAALCLKG RKARLNFPDE IDDLPRPSTC TARDIQVAAA  120
KAANAVNITK TGDDVADIDD GDDFWEGIEL PELIMTGGGW SPELFVAGED DTWVVDGDSY  180
QYQFMACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15391021276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531060.0AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467237.11e-115PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-104ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A078FQP01e-112A0A078FQP0_BRANA; BnaC05g00680D protein
TrEMBLA0A0D3C6Z11e-112A0A0D3C6Z1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDY41e-112A0A3P6FDY4_BRAOL; Uncharacterized protein
STRINGBo5g002600.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-91ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]