PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC46185_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 69aa    MW: 7986.37 Da    PI: 10.1666
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC46185_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.1e-141653699
                 EEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 36 ltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +tl d++g +W+  l+ rk+ +  + l +GW+eF kan +k+g++++ kl+++ ++++v+k+++k
  RrC46185_p1  1 MTLLDKNGVKWSTDLRSRKTNNDkIRLVGGWQEFFKANCVKTGESIIVKLIWEGDKTCVLKFCSK 65
                 689************986666556*****************************9999*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-11165IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.379165IPR003340B3 DNA binding domain
PfamPF023621.5E-12165IPR003340B3 DNA binding domain
CDDcd100172.02E-11163No hitNo description
SuperFamilySSF1019361.31E-12164IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MTLLDKNGVK WSTDLRSRKT NNDKIRLVGG WQEFFKANCV KTGESIIVKL IWEGDKTCVL  60
KFCSKIKHE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484682.13e-37PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230767e-21REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A0D2ZXH85e-36A0A0D2ZXH8_BRAOL; Uncharacterized protein
TrEMBLA0A0D3C1U61e-34A0A0D3C1U6_BRAOL; Uncharacterized protein
STRINGBo05499s010.18e-37(Brassica oleracea)
STRINGBo4g154840.12e-35(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-23B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]