PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4660_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 217aa    MW: 24489.2 Da    PI: 9.7777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4660_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06527123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+k F++  +L+ Hir H
  RrC4660_p1  5 HVCKFCNKKFPSGKSLEGHIRIH 27
                79*******************99 PP
2zf-C2H213.90.00016152174123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+F++  +L  H r+H
  RrC4660_p1 152 HECPICFKVFKSDQTLGGHKRSH 174
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.57E-7231No hitNo description
Gene3DG3DSA:3.30.160.603.6E-7230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759532IPR007087Zinc finger, C2H2
PfamPF139121.9E-5523IPR007087Zinc finger, C2H2
SMARTSM003550.0012527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139126.7E-8151174IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39152174IPR007087Zinc finger, C2H2
SMARTSM003550.18152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEKKHVCKFC NKKFPSGKSL EGHIRIHTNE YSVASVSFNA KNPTKNKKRL VVVDQREITP  60
LKQQQLCCRG CGGSNHMDCH CVGEKMVMDT RSDDLGVKEG GSKYELRKSK RVMPCYESDS  120
CVDTNNKIHR SSDSKSPMVK KASGANKSSK VHECPICFKV FKSDQTLGGH KRSHFIGNHG  180
HMIKNKAAAD MPIDLNLPSF LLRQQYLVYD YITYITS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934802e-31AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026842e-31CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K72e-31AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437508.12e-57PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A3P6B2Q52e-44A0A3P6B2Q5_BRACM; Uncharacterized protein
STRINGBo5g042740.19e-42(Brassica oleracea)
STRINGXP_006415935.13e-41(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.13e-33C2H2-like zinc finger protein