PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4706_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 314aa    MW: 35657.3 Da    PI: 6.5587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4706_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27121182159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs+e++ ++ei Y+g H ++
  RrC4706_p3 121 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSNENQMLFEISYRGIHSCS 182
                 59***************************98889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.609116180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-26118183IPR003657WRKY domain
SuperFamilySSF1182907.72E-24120183IPR003657WRKY domain
SMARTSM007747.6E-39121183IPR003657WRKY domain
PfamPF031064.7E-25122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MERKSNSGEW EKMKKEIHEL MTEGIDYAHQ LKSQLGSSSS DLESREHLAK KILESYHKSL  60
TIMNHSGELE QVSPHIHGGG SPKSDDSDQE HHQTITSSKK SMPRWTEKVR ITPGVEIDRM  120
LDDGFSWRKY GQKDILGAKF PRGYYRCTYR KSQGCEATKQ VQRSNENQML FEISYRGIHS  180
CSQAANVRSA IPVRVLEPDQ TQGHENLEMV KESLDTDNHN YNHQPHLHQS MQYPLSSTPT  240
LESNNMMLQL RDQNIDFFGS TSFSSDLGAN VNYDYLASHN VGSVSHSTSN SPSESPFESF  300
DPNNPFKGFG GFYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-191211791474Disease resistance protein RRS1
5w3x_D4e-191211791474Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300470.0KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481348.10.0PREDICTED: probable WRKY transcription factor 30
SwissprotQ9FL621e-156WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLA0A0D3DD660.0A0A0D3DD66_BRAOL; Uncharacterized protein
STRINGBo7g097170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-147WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]