PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4716_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 126aa MW: 13700.4 Da PI: 9.9076

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4716_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	4e-38	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGg +rk+ k+s RrC4716_p1 24 QQDQLPCPRCESTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGVSRKSSKRS 84 57889***************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	2	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MPSDLNESRR LTTKMPHGGA VGDQQDQLPC PRCESTNTKF CYYNNYNFSQ PRHFCKACRR 60 YWTHGGTLRD IPVGGVSRKS SKRSRTCSSS VAVSTAAVGS REFPLQATPV LFPPSSNDGG 120 VAAAKG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434422.1	3e-85	PREDICTED: dof zinc finger protein DOF5.8
Swissprot	Q9FGD6	2e-65	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A078FEI8	8e-76	A0A078FEI8_BRANA; BnaC07g16430D protein
TrEMBL	A0A0D3D8A9	8e-76	A0A0D3D8A9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EJ53	8e-76	A0A3P6EJ53_BRAOL; Uncharacterized protein
STRING	Bo7g064260.1	1e-76	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	6e-53	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]