PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4716_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 329aa    MW: 38162.8 Da    PI: 8.6481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4716_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-1820110196
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ffkv      ++s+ lv+p  f+ ++ g  k+ sk+++l de gr W v+ + + + g+ +v+++GW++F++ + L+ gDf++F++dg+s+f   v +
  RrC4716_p4  20 FFKVY--LPEFSSQELVIPQAFI-NIlG--KPLSKKVVLVDEIGRLWAVETKTEERVGGvVVFKQGWEKFANGHSLEFGDFLLFRYDGDSRF--DVAI 110
                 77777..77899999********.5525..45999****************874444446****************************9999..4444 PP
2B3391.5e-122223121098
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                 ++++++l +p +f++++g++ +e++++ l de+g++W +k+  +k++++++++ + W  F+++++L+    ++F+++  ++ ++ + +v++fr
  RrC4716_p4 222 AGSLRQLEIPTTFLKANGIELKEGQDIELCDENGKKWPLKI--EKHDRGHIFSyDLWLCFCESHNLRNPNKCLFEFIvsSDgTCNQILVRIFR 312
                 678899***********777778889***************..9999997766599*******************653366677778888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-2315116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-2218116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.73418114IPR003340B3 DNA binding domain
SMARTSM010191.9E-1620114IPR003340B3 DNA binding domain
PfamPF023624.5E-1620110IPR003340B3 DNA binding domain
CDDcd100178.35E-1620111No hitNo description
Gene3DG3DSA:2.40.330.104.8E-16209312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-15209312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.11213314IPR003340B3 DNA binding domain
CDDcd100174.77E-11214312No hitNo description
SMARTSM010192.6E-11216314IPR003340B3 DNA binding domain
PfamPF023623.6E-10222313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVEETSEKVS SPYTRKDLEF FKVYLPEFSS QELVIPQAFI NILGKPLSKK VVLVDEIGRL  60
WAVETKTEER VGGVVVFKQG WEKFANGHSL EFGDFLLFRY DGDSRFDVAI YAKDGCKKDL  120
DRFRVSVEVE PVIVKPVGIS IKPEPWEGCG ERVVQNRKRV FVREERNVLG EIEPDHRRNT  180
RRKVNRSRDP REMSWVADKK HQGFEEPVYK PKNPHFVRNI RAGSLRQLEI PTTFLKANGI  240
ELKEGQDIEL CDENGKKWPL KIEKHDRGHI FSYDLWLCFC ESHNLRNPNK CLFEFIVSSD  300
GTCNQILVRI FRGTLLTTAT KSGYHVLSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440048.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-121Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLA0A078FKU10.0A0A078FKU1_BRANA; BnaC07g16400D protein
TrEMBLA0A0D3D8A50.0A0A0D3D8A5_BRAOL; Uncharacterized protein
STRINGBo7g064220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-118B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]