PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4729_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 111aa    MW: 12788.5 Da    PI: 5.2386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4729_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.5e-155801797
                E--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 17 vlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                ++p  f ++h +g +e ++t +l++  s  +Wevk+  + ++    lt GWkeF+ a++L++gD+v+F+ ++++ f   v++f
  RrC4729_p2  5 TIPAAFYSKHvEGRNEHTTTAKLRSdVSDITWEVKI--EDGR---KLTHGWKEFALAHDLRVGDIVIFRQEKDMAF--QVTLF 80
                79*********777788899***997999*******..4444...39**********************7776777..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.788183IPR003340B3 DNA binding domain
SMARTSM010192.4E-9283IPR003340B3 DNA binding domain
PfamPF023623.5E-11579IPR003340B3 DNA binding domain
CDDcd100179.50E-15580No hitNo description
SuperFamilySSF1019361.96E-16590IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-22596IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MLLQTIPAAF YSKHVEGRNE HTTTAKLRSD VSDITWEVKI EDGRKLTHGW KEFALAHDLR  60
VGDIVIFRQE KDMAFQVTLF GPSCCEIQYG SCLKDENKLK LNSKQEESEE E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436172.15e-59PREDICTED: putative B3 domain-containing protein REM15
SwissprotQ8GYM47e-40REM14_ARATH; B3 domain-containing protein REM14
TrEMBLM4ETE75e-53M4ETE7_BRARP; Uncharacterized protein
STRINGBra032078.1-P8e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2146535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.13e-42B3 family protein