PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4729_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 132aa    MW: 14720.7 Da    PI: 5.9053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4729_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-1839129499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +ltp+dv   ++l+lp +f++++g+ k +  ++tl  ++g +W   l    k+g   l+ GWk+F++ang+k+gD+++++++ +++++ v+k++++
  RrC4729_p4  39 TLTPEDVR-ACQLILPSQFMKANGIYKLG--KITLLGQNGTRWLAFL--LSKDGLLALGCGWKDFCQANGVKTGDSFTLERVYEQDTTHVFKFCSN 129
                 45555555.578***********988655..8***************..999999*************************9888888889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2124130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2133129IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-2035130IPR003340B3 DNA binding domain
CDDcd100171.19E-1835127No hitNo description
PROSITE profilePS5086313.18335129IPR003340B3 DNA binding domain
PfamPF023621.2E-1738129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MQVECSEGRE KEYFPTQPSS GEERRDSSSA IKNQLLTLTL TPEDVRACQL ILPSQFMKAN  60
GIYKLGKITL LGQNGTRWLA FLLSKDGLLA LGCGWKDFCQ ANGVKTGDSF TLERVYEQDT  120
THVFKFCSNS GE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547839.13e-66B3 domain-containing protein REM12-like
SwissprotP0CAP46e-55REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078HB861e-64A0A078HB86_BRANA; BnaA09g41260D protein
TrEMBLA0A397Y2P96e-67A0A397Y2P9_BRACM; Uncharacterized protein
TrEMBLA0A397YA911e-64A0A397YA91_BRACM; Uncharacterized protein
STRINGBra007835.1-P1e-55(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.13e-57B3 family protein