PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4772_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

VOZ

Protein Properties

Length: 163aa MW: 18336.7 Da PI: 10.3543

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4772_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	153.9	1e-47	29	115	130	216
VOZ 130 pdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlt 216 dysgrgwhesrkq+mke++g+krsyymdpqp++ fewh++ey+ine+d +alyrlelk++++kks+kg+v+kd+ladlqkk+g+lt RrC4772_p3 29 LDYSGRGWHESRKQLMKEQAGQKRSYYMDPQPPGLFEWHIFEYQINESDVCALYRLELKQTNGKKSPKGRVAKDPLADLQKKMGQLT 115 59***********************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MQLQERFSHL QAARKEGRLG DHAVRAKTLD YSGRGWHESR KQLMKEQAGQ KRSYYMDPQP 60 PGLFEWHIFE YQINESDVCA LYRLELKQTN GKKSPKGRVA KDPLADLQKK MGQLTPEGAS 120 DKPSPPTKGR TKATKGVKLA TPATTVAQPD VSNNHTKEPS SHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013636082.1	4e-72	PREDICTED: transcription factor VOZ2-like
Refseq	XP_013636083.1	4e-72	PREDICTED: transcription factor VOZ2-like
Refseq	XP_013636084.1	4e-72	PREDICTED: transcription factor VOZ2-like
Swissprot	Q9SLB9	4e-56	VOZ2_ARATH; Transcription factor VOZ2
TrEMBL	A0A0D3C5T6	1e-70	A0A0D3C5T6_BRAOL; Uncharacterized protein
STRING	Bo4g191510.1	2e-71	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42400.1	2e-58	vascular plant one zinc finger protein 2

Publications ? help Back to Top
Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Koguchi M,Yamasaki K,Hirano T,Sato MH Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis. Plant Signal Behav, 2017. 12(3): p. e1295907 [PMID:28277968] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119]