PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4790_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 345aa MW: 39414.1 Da PI: 5.914

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4790_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.1	1.3e-19	15	61	4	50
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++ RrC4790_p1 15 SSYSLAATSLNSRLLTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 61 78999*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.349	22	64	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-13	25	96	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-10	27	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MRPPRSSSCS NSSPSSYSLA ATSLNSRLLT IFKKAQELTT LCDIEACVIH YGPDGELRTW 60 PENRDKVRDL ALRYIQLDEA KRRKKSLNLY EFLKKNKKTT MTTSSFKKRA KKNIQELKYP 120 VSDHYSVDQI NQLIQSLELS YSTLQERRRF LAAKANLEDR QHLGTQSLNP SQFTKYPQES 180 MFINQELCAY DQTSNNNFQH LCVSDHSAAQ ESGLPYQLMP YGGGYDQSMC TGNNFHVSSN 240 TQDYSVFPLE LQESVSNYGL NQLMQHEPYG FDQNMYMSDI TNNFNVVDPF LSNMLPDDFC 300 FGFQDPCGGN MVGNPSFSQD FNLDMSSSCV YENRLLLQES TLPSL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MRPPRSSSCS NSSPSSYSLA ATSLNSRLLT IFKKAQELTT LCDIEACVIH YGPDGELRTW  60
PENRDKVRDL ALRYIQLDEA KRRKKSLNLY EFLKKNKKTT MTTSSFKKRA KKNIQELKYP  120
VSDHYSVDQI NQLIQSLELS YSTLQERRRF LAAKANLEDR QHLGTQSLNP SQFTKYPQES  180
MFINQELCAY DQTSNNNFQH LCVSDHSAAQ ESGLPYQLMP YGGGYDQSMC TGNNFHVSSN  240
TQDYSVFPLE LQESVSNYGL NQLMQHEPYG FDQNMYMSDI TNNFNVVDPF LSNMLPDDFC  300
FGFQDPCGGN MVGNPSFSQD FNLDMSSSCV YENRLLLQES TLPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474882.1	0.0	PREDICTED: agamous-like MADS-box protein AGL81
Swissprot	Q9FLL0	9e-62	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A078I552	1e-156	A0A078I552_BRANA; BnaA04g09910D protein
STRING	Bo4g139560.1	1e-155	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	4e-63	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]