PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4790_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 155aa    MW: 17963.2 Da    PI: 10.9765
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4790_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind33.89.1e-111395290
                  HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
  HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90
                  F  +ly++++d++ + +isws +n++sfvv+d ++++  +L++     + +++F  +L   gF++v++  +         eF+h+ F +g 
    RrC4790_p2 13 FFLQLYQVVNDRSSDPIISWSkSNNHSFVVWDLKKLHI-LLKSsSVLGRTLTAFWVKLSSNGFRSVEKGPGV-------FEFEHDDFARGP 95
                  8999*****************8899***********99.665427788899****************99976.......********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-12894IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-69103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.99E-91095IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-81395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVRKLPTRSS SSFFLQLYQV VNDRSSDPII SWSKSNNHSF VVWDLKKLHI LLKSSSVLGR  60
TLTAFWVKLS SNGFRSVEKG PGVFEFEHDD FARGPLMKKM MVKPLSERIE TEKMMVKALS  120
ERIERFDAQI KIIKCRLKAK KASLKVETLF QNLRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481369.11e-106PREDICTED: heat stress transcription factor A-6a-like
TrEMBLA0A078HHE22e-67A0A078HHE2_BRANA; BnaC04g32170D protein
TrEMBLA0A0D3C0162e-67A0A0D3C016_BRAOL; Uncharacterized protein
STRINGBo4g139630.13e-68(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.12e-17Winged helix-turn-helix transcription repressor DNA-binding