PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC47_p14
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 330aa    MW: 37217.5 Da    PI: 8.1409
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC47_p14genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.79.3e-2493175371
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  RrC47_p14  93 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplndneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 175
                6799999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.2E-3688179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.7E-2991175IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-1894176IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.5E-2094175IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.26E-29182283IPR014889Transcription factor DP, C-terminal
SMARTSM011381.8E-47182330IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.75E-36182320No hitNo description
PfamPF087813.9E-32183303IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MFTGVSCYDL AASLKSGKSV SEMIEVNCRV EFTGLKREGR KEGMEMDLFV TPEKQRNHPS  60
SVSLGKTPVR RRLIVDDESE VVSEKKCQSR TSGGGLRQFS VMVCQKLEAK KITTYKEVAD  120
EIISDFATIK QNAEKPLNDN EYNEKNIRRR VYDALNVFMA LDIIARDKKE IRWKGLPITC  180
KKDVEEVKMD RNKIMNSVQK KVAFLKELRE KVSSLESLMS RNKEMVVKTE GPAEGFTLPF  240
ILLETNPHAV VEIEISEDMQ LVHLDFNSTP FSVHDDAYIL KLMQEHKLQQ QNRVSSPSST  300
HQHSSSAHSS SSSCIASGTS GPVSWNSGIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-2692177890PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2945310.0AJ294531.1 Arabidopsis thaliana mRNA for DP-like protein (dpa gene).
GenBankAJ3190270.0AJ319027.1 Arabidopsis thaliana partial mRNA for E2F dimerisation partner protein (dp2a gene).
GenBankAK1171350.0AK117135.1 Arabidopsis thaliana At5g02470 mRNA for putative DP-2 transcription factor, complete cds, clone: RAFL16-67-D16.
GenBankBT0052860.0BT005286.1 Arabidopsis thaliana At5g02470 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467493.10.0PREDICTED: transcription factor-like protein DPA isoform X2
SwissprotQ9FNY31e-178DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A078HSW00.0A0A078HSW0_BRANA; BnaA10g27090D protein
STRINGBra009586.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-170Transcription factor DP