PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4884_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 201aa MW: 23338.2 Da PI: 4.9317

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4884_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.1	3.6e-32	3	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ ++r t++gyW RrC4884_p1 3 LPPGFRFFPTDEELVVHFLNRKASLLPCHP-DVIPDLDLYPHDPWDLPGiytpkylsicfmqhirKALQEGRQWYFYSRKT--------QERLTSNGYW 92 79***********************999.99***********557888999888876654444777999999874........57999* PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + g d++++++ ++++vg+kk L+fy g++ +t+Wvm+ey+l RrC4884_p1 93 GSMGIDEPIFTSsTHKKVGIKKYLTFYLGDS----QTNWVMQEYSL 134 *****99867888******7654....68*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-37	1	169	IPR003441	NAC domain
PROSITE profile	PS51005	39.996	3	169	IPR003441	NAC domain
Pfam	PF02365	1.9E-21	4	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MNLPPGFRFF PTDEELVVHF LNRKASLLPC HPDVIPDLDL YPHDPWDLPG IYTPKYLSIC 60 FMQHIRKALQ EGRQWYFYSR KTQERLTSNG YWGSMGIDEP IFTSSTHKKV GIKKYLTFYL 120 GDSQTNWVMQ EYSLPDSSSR SSKRSNRGST SSTHKPDYSK WVICRVYEQN CSEEEDDDGA 180 ELSCLDEVFL SLDDLDEVSL P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	1	175	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	1	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	1	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	1	175	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	1	175	18	174	NAC domain-containing protein 19
3swm_B	1e-31	1	175	18	174	NAC domain-containing protein 19
3swm_C	1e-31	1	175	18	174	NAC domain-containing protein 19
3swm_D	1e-31	1	175	18	174	NAC domain-containing protein 19
3swp_A	1e-31	1	175	18	174	NAC domain-containing protein 19
3swp_B	1e-31	1	175	18	174	NAC domain-containing protein 19
3swp_C	1e-31	1	175	18	174	NAC domain-containing protein 19
3swp_D	1e-31	1	175	18	174	NAC domain-containing protein 19
4dul_A	1e-31	1	175	15	171	NAC domain-containing protein 19
4dul_B	1e-31	1	175	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966746	1e-138	KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433233.1	1e-121	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	1e-111	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A078H0M4	1e-116	A0A078H0M4_BRANA; BnaA02g34250D protein
TrEMBL	A0A078IBS6	1e-111	A0A078IBS6_BRANA; BnaC02g43170D protein
TrEMBL	A0A398ANP3	1e-116	A0A398ANP3_BRACM; Uncharacterized protein
TrEMBL	A0A3P6AL41	1e-116	A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBL	A0A3P6D8I0	1e-111	A0A3P6D8I0_BRAOL; Uncharacterized protein
TrEMBL	M4ESY5	1e-116	M4ESY5_BRARP; Uncharacterized protein
STRING	Bra031915.1-P	1e-117	(Brassica rapa)
STRING	Bo2g166280.1	1e-112	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-107	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]