PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC488_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 224aa    MW: 26253.6 Da    PI: 10.1077
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC488_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer35.22.8e-11801181958
  ZF-HD_dimer  19 ghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +h+vD C  fm+s ge+gta++l  aAC+CH +F  +e e
    RrC488_p5  80 AHVVDRCSKFMSS-GEDGTAESLISAACDCHQSFDWKEIE 118
                  79**********9.999*****************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-1754123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152311.14665116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-1180117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.74E-16148221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-24151222IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-24160217IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEIRDKKENG DGKTKIISKP SDHRQRETHH RKKWSNPDLD FDRNPIYLAD PAPRSHARPQ  60
TTSPTRSTDI NNANGTTRRA HVVDRCSKFM SSGEDGTAES LISAACDCHQ SFDWKEIEGM  120
FVLWMTFWGG GGKDPTESLT EDLNKFHQSF SVDQSQYHPK KRFRTKFSQE HKETMMEFSK  180
KIGWRMSKLE DNELNLFCRE TNVKRQVFKV WMHNNKQRAK KKVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-171612161873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064392e-49AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankAY0882552e-49AY088255.1 Arabidopsis thaliana clone 4845 mRNA, complete sequence.
GenBankCP0026852e-49CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596192.13e-87PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW73e-73ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A078JWH82e-89A0A078JWH8_BRANA; BnaCnng71430D protein
STRINGBo7g011260.11e-86(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.11e-75homeobox protein 24