PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4930_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 252aa    MW: 28780.5 Da    PI: 9.5275
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4930_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-2082132256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a++k++ge
  RrC4930_p1  82 LYRGVRQRH-WGKWVAEIRLPKT---RTRLWLGTFETAEEAALAYDQAARKIRGE 132
                 59******9.**********965...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-3581141No hitNo description
SuperFamilySSF541711.18E-2282140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-3382140IPR001471AP2/ERF domain
SMARTSM003805.6E-3982145IPR001471AP2/ERF domain
PROSITE profilePS5103223.02482139IPR001471AP2/ERF domain
PfamPF008473.7E-1483132IPR001471AP2/ERF domain
PRINTSPR003672.6E-118394IPR001471AP2/ERF domain
PRINTSPR003672.6E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MKVVTSSSSF PSSSKQEPLT PNNQTGPIGL NQLTPTQILQ IQRELHLRQN QARRRGSAHN  60
LHLLNAKPTL MKKTDVSKPV KLYRGVRQRH WGKWVAEIRL PKTRTRLWLG TFETAEEAAL  120
AYDQAARKIR GENARLNFPN NRDYKQTLSP TVNAKIESIF NTSDLPLHEL KTPAKTEEEF  180
FGFHYTGPKP DREREFSEMF GYGLGSSLES DITLLDLSSE WVKEDESFCM GLQKYPSFEI  240
DWDAIDKLSG SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2081139160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2081139463ATERF1
3gcc_A6e-2081139463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438564.11e-172PREDICTED: ethylene-responsive transcription factor ERF057-like
RefseqXP_018438565.11e-172PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-112ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A078HAW41e-153A0A078HAW4_BRANA; BnaC02g43540D protein
STRINGBo00615s260.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-104ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]