PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4933_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 288aa    MW: 32265 Da    PI: 7.1015
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4933_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.5e-20213247135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  RrC4933_p3 213 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 247
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.5E-18207257IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-15207269No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14212244IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.846212243IPR000679Zinc finger, GATA-type
CDDcd002029.99E-18212261No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003202.4E-18213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLVMNWLPEE ELKGLSDNFF DDFINHIDFP LEDIDTTNGE GGDWDAQFKE LEPPPMDMFT  60
SFPSEFNSCV AIKAGTQKAL PVLKQSSASA GINNTVHQSS SHPEVKASKL FQSSSPVSVL  120
ESSDGSFSPQ NSQRLSFPVK GVRSKRRRPT TLRVRYIYPF EPEKLITPGE PESETYYSDE  180
QSAKKKRKVS PSSYSSASSS SEGLNSDGIV WKCTHCETTK TPQWREGPNG PKTLCNACGV  240
RFRSGRLVPE YRPASSPTFI PSVHSNSHRK IIEMRRKEGD QFDDTRAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895181e-73AC189518.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491745.11e-175PREDICTED: GATA transcription factor 11
SwissprotQ6DBP81e-134GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A3P6EC501e-165A0A3P6EC50_BRAOL; Uncharacterized protein
STRINGBo5g008670.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-115GATA transcription factor 11