PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC494_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 119aa    MW: 13651.7 Da    PI: 7.8214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC494_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444.1e-1415106194
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                ffkv +p d++    l +p +f  ++ ++k  +  +++++  g+ W++kl    k+++    + + +GWk+ vk+ +Lk g+f+ F++dg++ f++++
  RrC494_p6  15 FFKVYLPDDSGD--DLDIPISFN-SY-LPKSLPEYIIVRSIYGNIWKLKLMR--KRCGnvekISMVNGWKRIVKDEDLKGGEFLAFEFDGSRLFNFCI 106
                788886666654..59******8.77.45668889***************44..333324668899*********************99977774443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-198112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-178112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-1313107No hitNo description
PROSITE profilePS5086311.60313110IPR003340B3 DNA binding domain
SMARTSM010193.5E-1415110IPR003340B3 DNA binding domain
PfamPF023629.7E-1215106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
TSKEGDSSDD CFPKFFKVYL PDDSGDDLDI PISFNSYLPK SLPEYIIVRS IYGNIWKLKL  60
MRKRCGNVEK ISMVNGWKRI VKDEDLKGGE FLAFEFDGSR LFNFCIYGHS TCKRLGVCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-1651121104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455147.12e-73PREDICTED: B3 domain-containing protein At5g60142-like
SwissprotQ9LST31e-55Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLA0A078H2E74e-66A0A078H2E7_BRANA; BnaA10g12970D protein
TrEMBLA0A397XKE74e-66A0A397XKE7_BRACM; Uncharacterized protein
TrEMBLA0A397XS614e-66A0A397XS61_BRACM; Uncharacterized protein
STRINGBo9g141120.13e-64(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.15e-58B3 family protein