 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC494_p7 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
AP2 |
| Protein Properties |
Length: 473aa MW: 51766.8 Da PI: 8.8775 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC494_p7 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.2 | 7.2e-17 | 135 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
RrC494_p7 135 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 184
78*******************......55***********************9997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MLDLNLNLNL NLEKEVLNQM DESVTSNSSL VNAEASSCID GEEELCSTPT VKFQFEILKG 60
GGREETTKEF FPVATKGDGG GASFVDLSGQ SSRTSVDISF LRGGNQGGDA ARVVMQPPAA 120
QPVKKSRRGP RSKSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAV 180
KFRGLEADIN FVISDYEEDL KQMANLSKEE VVQVLRRQSS GFSRNNSKYQ GVALHKIGGW 240
GAQREQLNGN MVYDKATGTK WNGREAASLI EPHASRIIPE AGNVIDARFL ACLTGRCCAA 300
NSKLDLNLRI SLSLGDSPKQ NLNNIVCGRN SKMENHMAAS TCDTPFNFLK RGSDHLINRH 360
VHPSAFFSSM ERTPKEGFMP RSPQSFPART WQAQDQSSGG TATTALALPL LSNAASSGFS 420
HSATHPPSSS TATFHPSQPF LNLNMPGLYV IHPSDYTSRH HHKHDSNRSQ SPP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT001916 | 1e-171 | BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds. |
