PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC49560_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 202aa    MW: 22637.3 Da    PI: 4.3378
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC49560_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.44.2e-09535939
                 HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
       SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevavii 39
                 r +tf+kR  g+  KA  L+ L+da++a++ 
  RrC49560_p1  5 RATTFTKRCSGLHSKAAQLCLLTDAQIAILA 35
                 89**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.526134IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-10363IPR002100Transcription factor, MADS-box
PfamPF003191.1E-8340IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
KREYRATTFT KRCSGLHSKA AQLCLLTDAQ IAILATPPST HSNVSFFSFG HSSVDAVVNA  60
YLTGQRLAPV REEPMDEDIG VCMARKELGL ECWWEKESLA RSKDPRELMD AMMAIERMLS  120
RLRSREFASD HEDLNMSNET MVKSDVVSQQ GTQEDVDETL NLQAVCCSPS DDGFDKIISE  180
EEDEILAICD SFCAKEDNNN NN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483026.11e-111PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A397Z8M11e-101A0A397Z8M1_BRACM; Uncharacterized protein
TrEMBLA0A3P5YM891e-102A0A3P5YM89_BRACM; Uncharacterized protein
TrEMBLM4F8M21e-102M4F8M2_BRARP; Uncharacterized protein
STRINGBra037434.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.16e-57M-type_MADS family protein