PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4998_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 210aa MW: 23996.9 Da PI: 10.4976

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4998_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	76.6	3e-24	40	91	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ +vers++dp +v +tYeg+H+h+ RrC4998_p1 40 LDDGYRWRKYGQKAVKNSPYPRSYYRCTT-------RVERSSDDPYIVMTTYEGQHTHP 91 59************************8.......6*******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-26	25	93	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-24	32	93	IPR003657	WRKY domain
PROSITE profile	PS50811	25.729	35	93	IPR003657	WRKY domain
SMART	SM00774	9.7E-32	40	92	IPR003657	WRKY domain
Pfam	PF03106	2.8E-20	41	91	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MLLLKIQKKQ NKSKRAKKKN QKKAREARVA FLTRSDIDNL DDGYRWRKYG QKAVKNSPYP 60 RSYYRCTTRV ERSSDDPYIV MTTYEGQHTH PFPMTRGHIA MLTSPILDRG ATRTSSSSFA 120 IPQPRYLLTQ HHQPYSNMYN NSLSMTNRSS SDGTFVNPGS SSFPGFGYDM SQASTSTTSA 180 IRDHGLLQDI LPSQIRSDTI NTRTNEEDKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-23	33	93	10	77	Probable WRKY transcription factor 4
2lex_A	1e-23	33	93	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430080	1e-172	KF430080.1 Brassica rapa WRKY transcription factor 75 (WRKY75) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013609375.1	1e-120	PREDICTED: probable WRKY transcription factor 48
Refseq	XP_022568430.1	1e-120	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-108	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0D3E0Y5	1e-118	A0A0D3E0Y5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DNT0	1e-118	A0A3P6DNT0_BRAOL; Uncharacterized protein
TrEMBL	V5RF98	1e-119	V5RF98_BRACM; WRKY transcription factor 75
STRING	Bo9g009900.1	1e-119	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-106	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]