PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5024_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 162aa MW: 18115.6 Da PI: 8.7655

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5024_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.5e-08	78	120	4	50
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 +h+ +Er RR++i +++ L+el+P + s+ Ka L + ++Y RrC5024_p1 78 SHSLAERARREKISERLTLLQELVPGC----SRITGKAVLLDEITNY 120 79************************9....6777777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-10	72	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.392	74	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-10	75	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.09E-5	78	120	No hit	No description
Pfam	PF00010	1.9E-5	78	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MIPATVNVNR LAAHRPNLKA GSGEIVRSKR SKLDKSGSSE NLIEKCDGKC INKDDAEPPE 60 PPEDYIHVRA RRGQTADSHS LAERARREKI SERLTLLQEL VPGCSRITGK AVLLDEITNY 120 ALGNLLDQSK DFRHDTILLP RTCLDSQTHN SSRAMDLFKL RC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC183493	2e-42	AC183493.1 Brassica oleracea Contig B, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432853.1	2e-45	PREDICTED: transcription factor bHLH77-like
Refseq	XP_020887229.1	6e-45	transcription factor bHLH77
Swissprot	Q9LK48	2e-45	BH077_ARATH; Transcription factor bHLH77
TrEMBL	D7L3G1	1e-43	D7L3G1_ARALL; Predicted protein
STRING	Al_scaffold_0003_2564	2e-44	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21408	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	2e-43	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]